SNP Report
Basic Infomation
| Name | rs61942052 dbSNP |
|---|---|
| Location | chr:12,49075983 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 42)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168659 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11168660 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11168680 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11168690 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11168691 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11168692 | 0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11168693 | 0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11168694 | 0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11168695 | 0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11168699 | 0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11168700 | 0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11168701 | 0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11168708 | 0.87[AFR][1000 genomes] |
| rs11832160 | 0.81[AMR][1000 genomes] |
| rs12366919 | 0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs17834622 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1895994 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2409084 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs3013 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4132370 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs61942009 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs61942011 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs61942012 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs61942013 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs61942018 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs61942047 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs61942048 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs61942049 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs61942051 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs61942053 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs61942058 | 0.92[EUR][1000 genomes] |
| rs61942059 | 0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6580694 | 0.87[AFR][1000 genomes] |
| rs7295027 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7295138 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7303113 | 0.81[AMR][1000 genomes] |
| rs73108510 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs73108566 | 0.91[AMR][1000 genomes] |
| rs7964801 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7966343 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7966463 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7979508 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KANSL2 | Proximal transcriptional regulation |
| LINC00467 | Distal transcriptional regulation |
| SNUPN | Distal transcriptional regulation |
| FA2H | Distal transcriptional regulation |
| SUPT6H | Distal transcriptional regulation |
| SDF2 | Distal transcriptional regulation |
| SIN3B | Distal transcriptional regulation |
| FCHO2 | Distal transcriptional regulation |
| MOSPD3 | Distal transcriptional regulation |
| FAM129B | Distal transcriptional regulation |
| KANSL2 | Distal transcriptional regulation |
| CCNT1 | Distal transcriptional regulation |
| CACNB3 | Distal transcriptional regulation |
| ADCY6 | Distal transcriptional regulation |
| ENSG00000257660 | Distal transcriptional regulation |
| DDX23 | Distal transcriptional regulation |
| GPR56 | Distal transcriptional regulation |
| ENSG00000207467 | Distal transcriptional regulation |
| BZRAP1 | Distal transcriptional regulation |
| BZRAP1-AS1 | Distal transcriptional regulation |
| TRANK1 | Distal transcriptional regulation |
| POLB | Distal transcriptional regulation |
| KANSL2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014