SNP Report

Basic Infomation

Name	rs61942053 dbSNP
Location	chr:12,49075984
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 40)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11168659	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11168660	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11168680	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11168690	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11168691	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11168692	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11168693	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11168694	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11168695	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11168699	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11168700	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11168701	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11832160	0.81[AMR][1000 genomes]
rs12366919	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17834622	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1895994	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2409084	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3013	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4132370	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61942009	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61942011	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61942012	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61942013	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61942018	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61942047	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61942048	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61942049	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61942051	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61942052	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61942058	0.93[EUR][1000 genomes]
rs61942059	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7295027	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7295138	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7303113	0.81[AMR][1000 genomes]
rs73108510	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73108566	0.91[AMR][1000 genomes]
rs7964801	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7966343	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7966463	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7979508	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
KANSL2	Proximal transcriptional regulation
LINC00467	Distal transcriptional regulation
SNUPN	Distal transcriptional regulation
FA2H	Distal transcriptional regulation
SUPT6H	Distal transcriptional regulation
SDF2	Distal transcriptional regulation
SIN3B	Distal transcriptional regulation
FCHO2	Distal transcriptional regulation
MOSPD3	Distal transcriptional regulation
FAM129B	Distal transcriptional regulation
KANSL2	Distal transcriptional regulation
CCNT1	Distal transcriptional regulation
CACNB3	Distal transcriptional regulation
ADCY6	Distal transcriptional regulation
ENSG00000257660	Distal transcriptional regulation
DDX23	Distal transcriptional regulation
GPR56	Distal transcriptional regulation
ENSG00000207467	Distal transcriptional regulation
BZRAP1	Distal transcriptional regulation
BZRAP1-AS1	Distal transcriptional regulation
TRANK1	Distal transcriptional regulation
POLB	Distal transcriptional regulation
KANSL2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)