SNP Report
Basic Infomation
| Name | rs6660613 dbSNP |
|---|---|
| Location | chr:1,201502306 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10800786 | 1.00[CHB][hapmap] |
| rs11577142 | 0.98[ASN][1000 genomes] |
| rs11578749 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11582434 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11586342 | 1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11586391 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11586401 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs11588293 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12076873 | 1.00[CHB][hapmap] |
| rs12134619 | 1.00[CHB][hapmap] |
| rs12725631 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12728629 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2152106 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2152107 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2184458 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2210733 | 1.00[CHB][hapmap] |
| rs3753979 | 1.00[CHB][hapmap] |
| rs3753984 | 0.81[ASN][1000 genomes] |
| rs3767524 | 1.00[CHB][hapmap] |
| rs3767525 | 1.00[CHB][hapmap] |
| rs4310467 | 0.95[ASN][1000 genomes] |
| rs4345829 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs515384 | 1.00[CHB][hapmap] |
| rs55683002 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58909817 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6672166 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6689149 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6692330 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs682137 | 1.00[CHB][hapmap] |
| rs682600 | 1.00[CHB][hapmap] |
| rs7355054 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7538112 | 1.00[CHB][hapmap] |
| rs7552162 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CSRP1 | Distal transcriptional regulation |
| ENSG00000224536 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014