SNP Report
Basic Infomation
| Name | rs3753984 dbSNP |
|---|---|
| Location | chr:1,201477367 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 43)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10800786 | 0.85[ASN][1000 genomes] |
| rs11578749 | 0.83[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11586342 | 0.81[ASN][1000 genomes] |
| rs11586391 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11586401 | 0.85[ASN][1000 genomes] |
| rs11588293 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12076215 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12076873 | 0.85[ASN][1000 genomes] |
| rs12128588 | 0.85[ASN][1000 genomes] |
| rs12134619 | 0.85[ASN][1000 genomes] |
| rs12728629 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2152106 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2152107 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2184458 | 0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2210732 | 0.83[ASN][1000 genomes] |
| rs2210733 | 0.83[ASN][1000 genomes] |
| rs3753979 | 0.85[ASN][1000 genomes] |
| rs3753982 | 0.85[ASN][1000 genomes] |
| rs3753987 | 0.83[ASN][1000 genomes] |
| rs3753989 | 0.83[ASN][1000 genomes] |
| rs3767524 | 0.85[ASN][1000 genomes] |
| rs3767525 | 0.98[ASN][1000 genomes] |
| rs3767526 | 0.83[ASN][1000 genomes] |
| rs3767532 | 0.98[ASN][1000 genomes] |
| rs4310467 | 0.85[ASN][1000 genomes] |
| rs4345829 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs515384 | 0.85[ASN][1000 genomes] |
| rs544677 | 0.83[ASN][1000 genomes] |
| rs55683002 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs58909817 | 0.81[ASN][1000 genomes] |
| rs61819661 | 0.83[ASN][1000 genomes] |
| rs6660613 | 0.81[ASN][1000 genomes] |
| rs6672166 | 0.81[ASN][1000 genomes] |
| rs6692330 | 0.81[AMR][1000 genomes] |
| rs682137 | 0.83[ASN][1000 genomes] |
| rs682600 | 0.83[ASN][1000 genomes] |
| rs683027 | 0.83[ASN][1000 genomes] |
| rs683467 | 0.85[ASN][1000 genomes] |
| rs7355054 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7538112 | 0.83[ASN][1000 genomes] |
| rs7552162 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9628675 | 0.85[ASN][1000 genomes] |
| rs9628676 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CSRP1 | Proximal transcriptional regulation |
| ARL8A | Distal transcriptional regulation |
| ENSG00000224536 | RNA binding protein mediated regulation |
| CSRP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014