SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 24)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11586342	0.86[JPT][hapmap]
rs11586401	0.86[JPT][hapmap]
rs11588293	0.86[JPT][hapmap]
rs12076215	0.82[ASN][1000 genomes]
rs12728629	0.86[JPT][hapmap]
rs2152106	0.86[JPT][hapmap]
rs2152107	0.86[JPT][hapmap]
rs2184458	0.86[JPT][hapmap]
rs2210733	1.00[CHB][hapmap]
rs3753984	0.83[ASN][1000 genomes]
rs3767525	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs3767532	0.81[ASN][1000 genomes]
rs515384	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs544677	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660613	1.00[CHB][hapmap]
rs6689149	0.86[JPT][hapmap]
rs6692330	0.86[JPT][hapmap]
rs680198	0.91[GIH][hapmap]
rs682137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682600	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683027	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683467	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7355054	0.84[JPT][hapmap]
rs7552162	0.86[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
CSRP1	Proximal transcriptional regulation
CSRP1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 4)