SNP Report
Basic Infomation
| Name | rs3767524 dbSNP |
|---|---|
| Location | chr:1,201478285 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10800786 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11586342 | 1.00[CHB][hapmap] |
| rs11586401 | 1.00[CHB][hapmap] |
| rs11588293 | 1.00[CHB][hapmap] |
| rs12076215 | 0.87[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs12076873 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12128588 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12134619 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12728629 | 1.00[CHB][hapmap] |
| rs2152106 | 1.00[CHB][hapmap] |
| rs2152107 | 1.00[CHB][hapmap] |
| rs2184458 | 1.00[CHB][hapmap] |
| rs2210732 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2210733 | 0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3753979 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3753982 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3753984 | 0.85[ASN][1000 genomes] |
| rs3753986 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3753987 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3753988 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3753989 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3767525 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs3767526 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3767532 | 0.83[ASN][1000 genomes] |
| rs61819661 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6660613 | 1.00[CHB][hapmap] |
| rs6689149 | 1.00[CHB][hapmap] |
| rs6692330 | 1.00[CHB][hapmap] |
| rs682137 | 1.00[CHB][hapmap] |
| rs7355054 | 1.00[CHB][hapmap] |
| rs7552162 | 1.00[CHB][hapmap] |
| rs9628675 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9628676 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CSRP1 | Proximal transcriptional regulation |
| ENSG00000224536 | RNA binding protein mediated regulation |
| CSRP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014