SNP Report

Basic Infomation

Name	rs6596013 dbSNP
Location	chr:5,130651969
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 107)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10035521	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10037742	1.00[CEU][hapmap]
rs10040779	1.00[CEU][hapmap]
rs10042016	1.00[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes]
rs10044009	0.89[EUR][1000 genomes]
rs10044196	1.00[CEU][hapmap]
rs10045867	1.00[CEU][hapmap]
rs10052978	1.00[CEU][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs10053705	1.00[CEU][hapmap]
rs10054370	0.89[EUR][1000 genomes]
rs10054414	1.00[CEU][hapmap]
rs10056689	1.00[CEU][hapmap]
rs10060699	1.00[CHD][hapmap]
rs10060879	1.00[CEU][hapmap]
rs10062233	1.00[CEU][hapmap]
rs10063129	1.00[CEU][hapmap]
rs10063968	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10070034	1.00[CEU][hapmap]
rs10075675	0.81[EUR][1000 genomes]
rs10076388	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10077153	1.00[CEU][hapmap]
rs10077715	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];0.93[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10078695	1.00[CEU][hapmap]
rs10079835	1.00[CEU][hapmap]
rs10477731	1.00[CEU][hapmap]
rs10477732	0.85[EUR][1000 genomes]
rs10478972	1.00[CEU][hapmap]
rs10478973	1.00[CEU][hapmap]
rs10478978	1.00[CEU][hapmap]
rs10478979	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10478983	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10478984	0.85[EUR][1000 genomes]
rs11951274	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11954454	1.00[CEU][hapmap]
rs12109957	0.93[EUR][1000 genomes]
rs12109963	0.93[EUR][1000 genomes]
rs13354690	1.00[CEU][hapmap]
rs17132470	1.00[CHD][hapmap]
rs17165675	1.00[CEU][hapmap]
rs17165688	1.00[CEU][hapmap]
rs17165932	1.00[CHD][hapmap]
rs17167011	1.00[CHD][hapmap]
rs3488	1.00[CEU][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3852208	1.00[CEU][hapmap]
rs4277909	0.96[EUR][1000 genomes]
rs58051717	0.89[EUR][1000 genomes]
rs59894268	0.89[EUR][1000 genomes]
rs6596002	1.00[CEU][hapmap]
rs6596016	0.96[EUR][1000 genomes]
rs6596017	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6596018	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes]
rs6596022	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs6596023	1.00[CEU][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs6596025	1.00[CEU][hapmap]
rs6863990	0.92[EUR][1000 genomes]
rs6866768	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6867201	0.89[EUR][1000 genomes]
rs6868218	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6868645	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6869961	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870252	0.85[EUR][1000 genomes]
rs6873300	1.00[CEU][hapmap]
rs6874091	1.00[CEU][hapmap]
rs6877958	1.00[CEU][hapmap]
rs6878583	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6879683	1.00[CHD][hapmap]
rs6880643	1.00[CEU][hapmap]
rs6880704	1.00[CEU][hapmap]
rs6882151	0.85[EUR][1000 genomes]
rs6884108	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6884517	0.81[EUR][1000 genomes]
rs6885947	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6888325	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6888994	1.00[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes]
rs6891125	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6892016	0.93[EUR][1000 genomes]
rs6894704	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6897209	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6897237	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6897798	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73249204	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73249208	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73262392	0.85[EUR][1000 genomes]
rs7356708	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7356767	1.00[CEU][hapmap]
rs7703943	1.00[CEU][hapmap]
rs7704655	1.00[CEU][hapmap]
rs7712818	1.00[CEU][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap]
rs7713612	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes]
rs7715067	1.00[CHD][hapmap]
rs7716702	1.00[CEU][hapmap]
rs7718039	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7726432	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7728375	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7729291	1.00[CEU][hapmap]
rs7734177	1.00[CEU][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap]
rs7735084	1.00[CEU][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap]
rs7735116	1.00[CEU][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap]
rs7735563	1.00[CHD][hapmap]
rs7735957	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[EUR][1000 genomes]
rs9285921	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9327595	1.00[CEU][hapmap]
rs9327597	1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap]
rs9327604	1.00[CEU][hapmap]
rs9327606	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9327610	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs960428	1.00[CEU][hapmap];0.89[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDC42SE2	Distal transcriptional regulation
CDC42SE2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)