SNP Report
Basic Infomation
| Name | rs6580634 dbSNP |
|---|---|
| Location | chr:12,48101230 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10783212 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10875682 | 0.96[ASN][1000 genomes] |
| rs10875685 | 0.84[ASN][1000 genomes] |
| rs10875686 | 0.87[ASN][1000 genomes] |
| rs10875687 | 0.85[ASN][1000 genomes] |
| rs10875688 | 0.85[ASN][1000 genomes] |
| rs11168191 | 0.96[ASN][1000 genomes] |
| rs11168192 | 0.96[ASN][1000 genomes] |
| rs11168199 | 0.97[ASN][1000 genomes] |
| rs11168200 | 0.98[ASN][1000 genomes] |
| rs11168203 | 0.98[ASN][1000 genomes] |
| rs11168208 | 0.91[ASN][1000 genomes] |
| rs11168214 | 0.85[ASN][1000 genomes] |
| rs11168215 | 0.85[ASN][1000 genomes] |
| rs11168216 | 0.85[ASN][1000 genomes] |
| rs12366410 | 0.96[ASN][1000 genomes] |
| rs12370643 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2072117 | 0.85[ASN][1000 genomes] |
| rs2240079 | 0.85[ASN][1000 genomes] |
| rs2240080 | 0.85[ASN][1000 genomes] |
| rs2283346 | 0.95[ASN][1000 genomes] |
| rs3764013 | 0.90[ASN][1000 genomes] |
| rs56240307 | 0.88[ASN][1000 genomes] |
| rs61917595 | 0.97[ASN][1000 genomes] |
| rs61917616 | 0.85[ASN][1000 genomes] |
| rs61917617 | 0.85[ASN][1000 genomes] |
| rs7136561 | 0.97[ASN][1000 genomes] |
| rs7311663 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7484827 | 0.85[ASN][1000 genomes] |
| rs7969186 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7976748 | 0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RPAP3 | Proximal transcriptional regulation |
| SLC48A1 | Distal transcriptional regulation |
| HDAC7 | Distal transcriptional regulation |
| RAPGEF3 | Distal transcriptional regulation |
| ENSG00000257433 | Distal transcriptional regulation |
| ENDOU | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014