SNP Report
Basic Infomation
| Name | rs2240079 dbSNP |
|---|---|
| Location | chr:12,48129344 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10783212 | 0.83[ASN][1000 genomes] |
| rs10875682 | 0.81[ASN][1000 genomes] |
| rs10875685 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10875686 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10875687 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10875688 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168191 | 0.81[ASN][1000 genomes] |
| rs11168192 | 0.94[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs11168199 | 0.94[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs11168200 | 0.94[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs11168203 | 0.83[ASN][1000 genomes] |
| rs11168208 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11168214 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168215 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168216 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12366410 | 0.94[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs12370643 | 0.94[CHB][hapmap];0.83[JPT][hapmap] |
| rs2072117 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2240080 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2283346 | 0.88[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs3764013 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs61917595 | 0.82[ASN][1000 genomes] |
| rs61917616 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61917617 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6580634 | 0.85[ASN][1000 genomes] |
| rs7136561 | 0.94[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs7311663 | 0.94[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs7484827 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs757283 | 0.88[YRI][hapmap] |
| rs7969186 | 0.83[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs7976748 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs877196 | 0.88[YRI][hapmap] |
| rs877197 | 0.83[LWK][hapmap];0.88[YRI][hapmap] |
| rs877198 | 0.88[YRI][hapmap] |
| rs879177 | 0.88[YRI][hapmap] |
| rs879179 | 0.88[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAPGEF3 | Proximal transcriptional regulation |
| HDAC7 | Distal transcriptional regulation |
| RAPGEF3 | Distal transcriptional regulation |
| SLC48A1 | Distal transcriptional regulation |
| RPAP3 | Distal transcriptional regulation |
| ENSG00000257433 | Distal transcriptional regulation |
| ENSG00000257433 | RNA binding protein mediated regulation |
| RAPGEF3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014