SNP Report

Basic Infomation

Name	rs11168192 dbSNP
Location	chr:12,48053492
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 33)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10783212	0.97[ASN][1000 genomes]
rs10875682	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10875685	0.89[CHB][hapmap];0.80[ASN][1000 genomes]
rs10875686	0.83[ASN][1000 genomes]
rs10875687	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs10875688	0.81[ASN][1000 genomes]
rs11168191	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11168200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11168203	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11168208	0.80[CEU][hapmap];0.94[CHB][hapmap];0.87[ASN][1000 genomes]
rs11168214	0.81[ASN][1000 genomes]
rs11168215	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs11168216	0.81[ASN][1000 genomes]
rs12366410	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12370643	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs2072117	0.81[ASN][1000 genomes]
rs2240079	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs2240080	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs2283346	0.93[CEU][hapmap];0.94[CHB][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3764013	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs56240307	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61917595	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61917616	0.81[ASN][1000 genomes]
rs61917617	0.81[ASN][1000 genomes]
rs6580634	0.96[ASN][1000 genomes]
rs7136143	0.80[EUR][1000 genomes]
rs7136561	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7311663	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[ASN][1000 genomes]
rs739858	0.80[EUR][1000 genomes]
rs7484827	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs7969186	0.89[CHB][hapmap];0.88[ASN][1000 genomes]
rs7976748	0.82[CEU][hapmap];0.94[CHB][hapmap];0.87[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
RPAP3	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)