SNP Report
Basic Infomation
| Name | rs56240307 dbSNP |
|---|---|
| Location | chr:12,48043638 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10783212 | 0.90[ASN][1000 genomes] |
| rs10875682 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11168191 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11168192 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11168199 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11168200 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11168203 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11168208 | 0.82[ASN][1000 genomes] |
| rs12366410 | 0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12370643 | 0.98[ASN][1000 genomes] |
| rs2283346 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3764013 | 0.80[ASN][1000 genomes] |
| rs61917595 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6580634 | 0.88[ASN][1000 genomes] |
| rs7136143 | 0.84[EUR][1000 genomes] |
| rs7136561 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7311663 | 0.92[ASN][1000 genomes] |
| rs739858 | 0.84[EUR][1000 genomes] |
| rs7969186 | 0.83[ASN][1000 genomes] |
| rs7976748 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RPAP3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014