SNP Report
Basic Infomation
| Name | rs6514062 dbSNP |
|---|---|
| Location | chr:20,44432879 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11537645 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11699641 | 1.00[CEU][hapmap] |
| rs1516579 | 0.94[ASN][1000 genomes] |
| rs16990761 | 1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs16990793 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2868348 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4810473 | 0.86[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4812964 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4812965 | 0.87[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs56235529 | 0.96[ASN][1000 genomes] |
| rs56948489 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59035785 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs59370923 | 0.85[ASN][1000 genomes] |
| rs59673641 | 0.87[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs59707569 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032389 | 1.00[CEU][hapmap] |
| rs60514274 | 0.83[ASN][1000 genomes] |
| rs6104289 | 1.00[CEU][hapmap] |
| rs6104296 | 1.00[CEU][hapmap] |
| rs6514063 | 0.82[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66701110 | 1.00[ASN][1000 genomes] |
| rs73124762 | 0.83[ASN][1000 genomes] |
| rs73306407 | 1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs73306423 | 0.96[ASN][1000 genomes] |
| rs73306458 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73306487 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs800684 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs8115525 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PCIF1 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| UBE2C | Distal transcriptional regulation |
| DNTTIP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014