SNP Report
Basic Infomation
| Name | rs1516579 dbSNP |
|---|---|
| Location | chr:20,44407144 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 38)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11537645 | 0.94[ASN][1000 genomes] |
| rs16990631 | 1.00[CEU][hapmap] |
| rs16990761 | 1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16990793 | 0.94[ASN][1000 genomes] |
| rs2868348 | 0.94[ASN][1000 genomes] |
| rs41282762 | 0.86[EUR][1000 genomes] |
| rs41282768 | 0.83[EUR][1000 genomes] |
| rs45549239 | 0.86[EUR][1000 genomes] |
| rs4812964 | 0.94[ASN][1000 genomes] |
| rs4812965 | 0.82[ASN][1000 genomes] |
| rs55794417 | 0.83[EUR][1000 genomes] |
| rs56235529 | 0.90[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs56948489 | 0.94[ASN][1000 genomes] |
| rs59035785 | 0.98[ASN][1000 genomes] |
| rs59673641 | 0.82[ASN][1000 genomes] |
| rs59707569 | 0.94[ASN][1000 genomes] |
| rs6514062 | 0.94[ASN][1000 genomes] |
| rs6514063 | 0.94[ASN][1000 genomes] |
| rs66628061 | 0.92[EUR][1000 genomes] |
| rs66701110 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs67571923 | 0.89[EUR][1000 genomes] |
| rs7260934 | 0.81[EUR][1000 genomes] |
| rs73120855 | 0.92[EUR][1000 genomes] |
| rs73122716 | 0.92[EUR][1000 genomes] |
| rs73122729 | 0.92[EUR][1000 genomes] |
| rs73122731 | 0.92[EUR][1000 genomes] |
| rs73122735 | 0.86[EUR][1000 genomes] |
| rs73122739 | 0.86[EUR][1000 genomes] |
| rs73122754 | 0.86[EUR][1000 genomes] |
| rs73122763 | 0.86[EUR][1000 genomes] |
| rs73122768 | 0.89[EUR][1000 genomes] |
| rs73306407 | 0.92[ASN][1000 genomes] |
| rs73306423 | 0.98[ASN][1000 genomes] |
| rs73306458 | 0.98[ASN][1000 genomes] |
| rs73306487 | 0.94[ASN][1000 genomes] |
| rs800684 | 0.98[ASN][1000 genomes] |
| rs8115525 | 0.98[ASN][1000 genomes] |
| rs8118462 | 0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000221046 | Proximal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| ZSWIM1 | Distal transcriptional regulation |
| SDC4 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| UBE2C | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014