SNP Report
Basic Infomation
| Name | rs4812965 dbSNP |
|---|---|
| Location | chr:20,44452175 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11537645 | 0.87[ASN][1000 genomes] |
| rs1516579 | 0.82[ASN][1000 genomes] |
| rs16990761 | 0.82[ASN][1000 genomes] |
| rs16990793 | 0.87[ASN][1000 genomes] |
| rs2868348 | 0.87[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4810473 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4812964 | 0.87[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs56235529 | 0.83[ASN][1000 genomes] |
| rs56948489 | 0.84[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs59035785 | 0.83[ASN][1000 genomes] |
| rs59370923 | 0.98[ASN][1000 genomes] |
| rs59673641 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59707569 | 0.87[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs60514274 | 0.87[ASN][1000 genomes] |
| rs6514062 | 0.87[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6514063 | 0.87[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs66701110 | 0.87[ASN][1000 genomes] |
| rs73124762 | 0.87[ASN][1000 genomes] |
| rs73306423 | 0.83[ASN][1000 genomes] |
| rs73306458 | 0.84[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs73306487 | 0.87[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs800684 | 0.83[ASN][1000 genomes] |
| rs8115525 | 0.87[AFR][1000 genomes];0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| UBE2C | Distal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014