SNP Report
Basic Infomation
| Name | rs62399349 dbSNP |
|---|---|
| Location | chr:6,20815480 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 78)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10806924 | 0.88[ASN][1000 genomes] |
| rs10806925 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10806927 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10946412 | 0.96[ASN][1000 genomes] |
| rs10946414 | 0.88[ASN][1000 genomes] |
| rs11968853 | 0.93[ASN][1000 genomes] |
| rs12111182 | 0.90[ASN][1000 genomes] |
| rs12198243 | 0.88[ASN][1000 genomes] |
| rs12209113 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12213956 | 0.96[ASN][1000 genomes] |
| rs12215186 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12661606 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2745932 | 0.85[ASN][1000 genomes] |
| rs2745933 | 0.85[ASN][1000 genomes] |
| rs2819993 | 0.85[ASN][1000 genomes] |
| rs2819997 | 0.82[ASN][1000 genomes] |
| rs2820000 | 0.82[ASN][1000 genomes] |
| rs4077405 | 0.86[ASN][1000 genomes] |
| rs4330530 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4373348 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4395717 | 0.94[ASN][1000 genomes] |
| rs4446563 | 0.94[ASN][1000 genomes] |
| rs4478387 | 0.86[ASN][1000 genomes] |
| rs4585542 | 0.82[ASN][1000 genomes] |
| rs4712545 | 0.84[ASN][1000 genomes] |
| rs4712549 | 0.93[ASN][1000 genomes] |
| rs4712552 | 0.96[ASN][1000 genomes] |
| rs4712553 | 0.96[ASN][1000 genomes] |
| rs4712554 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4712555 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6901110 | 0.94[ASN][1000 genomes] |
| rs6902880 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6915746 | 0.81[ASN][1000 genomes] |
| rs6923264 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6926335 | 0.86[ASN][1000 genomes] |
| rs6926436 | 0.82[ASN][1000 genomes] |
| rs6936300 | 0.84[ASN][1000 genomes] |
| rs6936840 | 0.84[ASN][1000 genomes] |
| rs6938757 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6941727 | 0.84[ASN][1000 genomes] |
| rs7747989 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7750031 | 0.82[ASN][1000 genomes] |
| rs7751154 | 0.82[ASN][1000 genomes] |
| rs7752140 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7752310 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7763704 | 0.88[ASN][1000 genomes] |
| rs7772390 | 0.83[ASN][1000 genomes] |
| rs9348443 | 0.86[ASN][1000 genomes] |
| rs9348444 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9348445 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9348447 | 0.94[ASN][1000 genomes] |
| rs9350281 | 0.82[ASN][1000 genomes] |
| rs9350297 | 0.88[ASN][1000 genomes] |
| rs9356752 | 0.82[ASN][1000 genomes] |
| rs9358366 | 0.84[ASN][1000 genomes] |
| rs9358372 | 0.86[ASN][1000 genomes] |
| rs9366367 | 0.82[ASN][1000 genomes] |
| rs9368232 | 0.82[ASN][1000 genomes] |
| rs9368240 | 0.94[ASN][1000 genomes] |
| rs9460558 | 0.93[ASN][1000 genomes] |
| rs9460559 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9460562 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9460563 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9465884 | 0.82[ASN][1000 genomes] |
| rs9465886 | 0.82[ASN][1000 genomes] |
| rs9465891 | 0.84[ASN][1000 genomes] |
| rs9465897 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9465898 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9465899 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9465900 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9465902 | 0.97[ASN][1000 genomes] |
| rs9465904 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9465905 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9465906 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9465907 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9465909 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9465910 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9465913 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014