SNP Report

Basic Infomation

Name	rs6941727 dbSNP
Location	chr:6,20772574
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 57)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10806924	0.92[ASN][1000 genomes]
rs10946412	0.80[ASN][1000 genomes]
rs11968853	0.88[ASN][1000 genomes]
rs12111182	0.92[ASN][1000 genomes]
rs12213956	0.80[ASN][1000 genomes]
rs12661606	0.84[ASN][1000 genomes]
rs12665631	0.81[ASN][1000 genomes]
rs2745932	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2745933	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2819993	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2819997	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2820000	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4330530	0.85[ASN][1000 genomes]
rs4373348	0.88[ASN][1000 genomes]
rs4478387	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4585542	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4712545	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712549	0.90[ASN][1000 genomes]
rs4712552	0.80[ASN][1000 genomes]
rs4712553	0.80[ASN][1000 genomes]
rs4712555	0.80[ASN][1000 genomes]
rs62399349	0.84[ASN][1000 genomes]
rs6902880	0.88[ASN][1000 genomes]
rs6923264	0.80[ASN][1000 genomes]
rs6926436	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6936300	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936840	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6938757	0.80[ASN][1000 genomes]
rs7747989	0.85[ASN][1000 genomes]
rs7750031	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7751154	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7752140	0.84[ASN][1000 genomes]
rs7752310	0.84[ASN][1000 genomes]
rs7772390	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9348443	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9348444	0.88[ASN][1000 genomes]
rs9348445	0.88[ASN][1000 genomes]
rs9350280	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9350281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9356752	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9358366	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9460558	0.90[ASN][1000 genomes]
rs9460559	0.86[ASN][1000 genomes]
rs9465884	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9465886	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9465891	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9465897	0.87[ASN][1000 genomes]
rs9465898	0.86[ASN][1000 genomes]
rs9465899	0.86[ASN][1000 genomes]
rs9465900	0.86[ASN][1000 genomes]
rs9465902	0.81[ASN][1000 genomes]
rs9465904	0.80[ASN][1000 genomes]
rs9465905	0.80[ASN][1000 genomes]
rs9465906	0.80[ASN][1000 genomes]
rs9465907	0.80[ASN][1000 genomes]
rs9465909	0.80[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000233848	RNA binding protein mediated regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)