SNP Report
Basic Infomation
| Name | rs12665631 dbSNP |
|---|---|
| Location | chr:6,20791539 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10806924 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10946414 | 0.80[EUR][1000 genomes] |
| rs11968853 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12111182 | 0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2819997 | 0.80[ASN][1000 genomes] |
| rs2820000 | 0.80[ASN][1000 genomes] |
| rs4330530 | 0.80[ASN][1000 genomes] |
| rs4373348 | 0.83[ASN][1000 genomes] |
| rs4478387 | 0.84[ASN][1000 genomes] |
| rs4585542 | 0.80[ASN][1000 genomes] |
| rs4712545 | 0.81[ASN][1000 genomes] |
| rs4712549 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6902880 | 0.83[ASN][1000 genomes] |
| rs6926436 | 0.80[ASN][1000 genomes] |
| rs6936300 | 0.81[ASN][1000 genomes] |
| rs6936840 | 0.81[ASN][1000 genomes] |
| rs6941727 | 0.81[ASN][1000 genomes] |
| rs7747989 | 0.80[ASN][1000 genomes] |
| rs7751154 | 0.80[ASN][1000 genomes] |
| rs9348443 | 0.84[ASN][1000 genomes] |
| rs9348444 | 0.83[ASN][1000 genomes] |
| rs9348445 | 0.83[ASN][1000 genomes] |
| rs9350281 | 0.80[ASN][1000 genomes] |
| rs9356752 | 0.80[ASN][1000 genomes] |
| rs9358366 | 0.81[ASN][1000 genomes] |
| rs9368232 | 0.80[ASN][1000 genomes] |
| rs9460558 | 0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9460559 | 0.81[ASN][1000 genomes] |
| rs9465884 | 0.80[ASN][1000 genomes] |
| rs9465886 | 0.80[ASN][1000 genomes] |
| rs9465891 | 0.81[ASN][1000 genomes] |
| rs9465897 | 0.82[ASN][1000 genomes] |
| rs9465898 | 0.81[ASN][1000 genomes] |
| rs9465899 | 0.81[ASN][1000 genomes] |
| rs9465900 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000233848 | RNA binding protein mediated regulation |
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014