SNP Report
Name | rs9358372   dbSNP |
---|---|
Location | chr:6,20812588 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10806924 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes] |
rs10806925 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs10806927 | 0.85[ASN][1000 genomes] |
rs10946412 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs11968853 | 0.85[ASN][1000 genomes] |
rs12111182 | 0.81[ASN][1000 genomes] |
rs12198243 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs12209113 | 0.85[ASN][1000 genomes] |
rs12213956 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12215186 | 0.85[ASN][1000 genomes] |
rs12661606 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs2745933 | 0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap] |
rs2819993 | 0.95[CHB][hapmap];0.86[JPT][hapmap] |
rs2819997 | 0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap] |
rs2820000 | 0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap] |
rs4077405 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap] |
rs4131667 | 0.86[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap] |
rs4293992 | 0.84[CEU][hapmap] |
rs4330530 | 0.90[ASN][1000 genomes] |
rs4373348 | 0.87[ASN][1000 genomes] |
rs4395717 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4446563 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4478387 | 0.95[CHB][hapmap];0.86[JPT][hapmap] |
rs4585542 | 0.95[CHB][hapmap];0.86[JPT][hapmap] |
rs4712545 | 0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap] |
rs4712549 | 0.85[ASN][1000 genomes] |
rs4712552 | 0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs4712553 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs4712554 | 0.82[ASN][1000 genomes] |
rs4712555 | 0.87[ASN][1000 genomes] |
rs62399349 | 0.86[ASN][1000 genomes] |
rs6901110 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6902880 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs6923264 | 0.87[ASN][1000 genomes] |
rs6936300 | 0.95[CHB][hapmap];0.86[JPT][hapmap] |
rs6936840 | 0.95[CHB][hapmap];0.86[JPT][hapmap] |
rs6938757 | 0.87[ASN][1000 genomes] |
rs7747989 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
rs7752140 | 0.86[ASN][1000 genomes] |
rs7752310 | 0.86[ASN][1000 genomes] |
rs7763704 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs7772390 | 0.95[CHB][hapmap];0.86[JPT][hapmap] |
rs9348443 | 0.95[CHB][hapmap];0.86[JPT][hapmap] |
rs9348444 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9348445 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9348447 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs9356752 | 0.95[CHB][hapmap];0.86[JPT][hapmap] |
rs9356754 | 0.84[CEU][hapmap];0.83[TSI][hapmap] |
rs9358366 | 0.95[CHB][hapmap];0.82[JPT][hapmap] |
rs9366367 | 0.90[CHB][hapmap];0.82[JPT][hapmap] |
rs9368232 | 0.95[CHB][hapmap];0.86[JPT][hapmap] |
rs9368240 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs9460558 | 0.85[ASN][1000 genomes] |
rs9460559 | 0.83[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes] |
rs9460562 | 0.83[ASN][1000 genomes] |
rs9460563 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.83[ASN][1000 genomes] |
rs9465886 | 0.95[CHB][hapmap];0.86[JPT][hapmap] |
rs9465891 | 0.95[CHB][hapmap];0.86[JPT][hapmap] |
rs9465897 | 0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
rs9465898 | 0.89[ASN][1000 genomes] |
rs9465899 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs9465900 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs9465902 | 0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs9465904 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[ASN][1000 genomes] |
rs9465905 | 0.87[ASN][1000 genomes] |
rs9465906 | 0.87[ASN][1000 genomes] |
rs9465907 | 0.87[ASN][1000 genomes] |
rs9465909 | 0.87[ASN][1000 genomes] |
rs9465910 | 0.84[ASN][1000 genomes] |
rs9465913 | 0.85[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
CDKAL1 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
TCFL5 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014