SNP Report
Basic Infomation
| Name | rs6060930 dbSNP |
|---|---|
| Location | chr:20,30347832 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12625006 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs15817 | 0.87[ASW][hapmap] |
| rs2149282 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs2377317 | 1.00[ASW][hapmap] |
| rs3746599 | 0.95[CHB][hapmap];0.86[JPT][hapmap] |
| rs4453755 | 1.00[ASW][hapmap] |
| rs4911528 | 0.84[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs4911532 | 0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap] |
| rs6058189 | 0.87[ASW][hapmap] |
| rs6060262 | 0.87[ASW][hapmap] |
| rs6060403 | 0.87[ASW][hapmap] |
| rs6060952 | 1.00[ASW][hapmap] |
| rs6088997 | 1.00[ASW][hapmap] |
| rs6120890 | 0.87[ASW][hapmap] |
| rs6142553 | 0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TPX2 | Distal transcriptional regulation |
| TPX2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| DUSP15 | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014