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rVarBase
SNP Report
Basic Infomation
Name
rs3746599  
dbSNP
Location
chr:20,30437522
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12625006
0.85[CHB][hapmap];0.85[JPT][hapmap]
rs2149282
0.91[CHB][hapmap];0.86[JPT][hapmap]
rs4911528
0.89[CHB][hapmap];0.89[JPT][hapmap]
rs4911532
0.87[CHB][hapmap];0.86[JPT][hapmap]
rs6060930
0.95[CHB][hapmap];0.86[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
DUSP15
Proximal transcriptional regulation
FOXS1
Proximal transcriptional regulation
FOXS1
Distal transcriptional regulation
C20orf112
Distal transcriptional regulation
DUSP15
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)