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rVarBase
SNP Report
Basic Infomation
Name
rs12625006  
dbSNP
Location
chr:20,30350986
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2149282
0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3746599
0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4911528
0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4911532
0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6060930
0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6142553
0.93[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
TPX2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)