SNP Report

Basic Infomation

Name	rs6058560 dbSNP
Location	chr:20,30810167
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 35)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10485498	0.86[ASW][hapmap];0.83[MKK][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1407014	0.93[ASW][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17123088	0.93[ASW][hapmap];0.95[LWK][hapmap];0.83[AFR][1000 genomes]
rs41288634	0.83[AFR][1000 genomes]
rs58400008	0.85[AFR][1000 genomes]
rs58436169	0.85[AFR][1000 genomes]
rs58980932	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6057539	0.84[AFR][1000 genomes]
rs6058544	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6058545	0.85[ASW][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6058547	0.87[ASW][hapmap]
rs6058549	0.86[ASW][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6058559	0.85[AFR][1000 genomes]
rs6058561	0.85[AFR][1000 genomes]
rs6058562	0.85[AFR][1000 genomes]
rs6058564	0.85[AFR][1000 genomes]
rs6058565	0.85[AFR][1000 genomes]
rs6058568	0.93[ASW][hapmap]
rs6058570	0.93[ASW][hapmap]
rs6058571	0.83[AFR][1000 genomes]
rs6058573	0.92[LWK][hapmap];0.83[AFR][1000 genomes]
rs6058576	0.83[AFR][1000 genomes]
rs6061209	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6061211	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6061222	0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6061224	0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6061226	0.85[AFR][1000 genomes]
rs6061228	0.85[AFR][1000 genomes]
rs6061229	0.93[ASW][hapmap];0.80[AFR][1000 genomes]
rs6579005	0.93[ASW][hapmap];0.95[LWK][hapmap];0.83[AFR][1000 genomes]
rs7273131	0.83[AFR][1000 genomes]
rs73237210	0.85[AFR][1000 genomes]
rs73237211	0.85[AFR][1000 genomes]
rs73252373	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73903573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
POFUT1	Distal transcriptional regulation
POFUT1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)