SNP Report
Basic Infomation
| Name | rs6058565 dbSNP |
|---|---|
| Location | chr:20,30814640 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1056777 | 0.81[AFR][1000 genomes] |
| rs17123073 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17123085 | 0.87[AFR][1000 genomes] |
| rs17123088 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs41288634 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58400008 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58436169 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6057539 | 0.99[AFR][1000 genomes] |
| rs6058547 | 0.83[AFR][1000 genomes] |
| rs6058559 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6058560 | 0.85[AFR][1000 genomes] |
| rs6058561 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6058562 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6058564 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs6058568 | 0.87[AFR][1000 genomes] |
| rs6058570 | 0.86[AFR][1000 genomes] |
| rs6058571 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6058573 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6058576 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6058585 | 0.80[AFR][1000 genomes] |
| rs6061226 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6061228 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6061229 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6579005 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7273131 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7274357 | 0.88[AFR][1000 genomes] |
| rs7274665 | 0.87[AFR][1000 genomes] |
| rs73235294 | 0.88[AFR][1000 genomes] |
| rs73235295 | 0.88[AFR][1000 genomes] |
| rs73235301 | 0.88[AFR][1000 genomes] |
| rs73237210 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73237211 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73903573 | 0.85[AFR][1000 genomes] |
| rs8122133 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000243952 | Distal transcriptional regulation |
| PLAGL2 | Distal transcriptional regulation |
| POFUT1 | Distal transcriptional regulation |
| POFUT1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014