SNP Report
Basic Infomation
| Name | rs6058549 dbSNP |
|---|---|
| Location | chr:20,30793977 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10485498 | 1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1407014 | 0.94[ASW][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17123088 | 0.81[ASW][hapmap];0.94[MKK][hapmap] |
| rs58980932 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6058544 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6058545 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6058547 | 0.88[ASW][hapmap];0.83[LWK][hapmap] |
| rs6058560 | 0.86[ASW][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6058568 | 0.81[ASW][hapmap] |
| rs6058570 | 0.81[ASW][hapmap] |
| rs6058573 | 0.97[MKK][hapmap] |
| rs6058585 | 0.94[MKK][hapmap] |
| rs6061209 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6061211 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6061222 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6061224 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6061229 | 0.81[ASW][hapmap];0.85[LWK][hapmap];0.94[MKK][hapmap] |
| rs6579005 | 0.81[ASW][hapmap];0.94[MKK][hapmap] |
| rs73252373 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73903573 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| POFUT1 | Proximal transcriptional regulation |
| TSPY26P | Distal transcriptional regulation |
| ASXL1 | Distal transcriptional regulation |
| HCK | Distal transcriptional regulation |
| POFUT1 | Distal transcriptional regulation |
| PLAGL2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014