SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 17)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10485498	1.00[ASW][hapmap];0.94[LWK][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1407014	0.94[ASW][hapmap];0.89[LWK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17123088	0.80[ASW][hapmap]
rs58980932	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6058544	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6058547	0.87[ASW][hapmap];0.82[LWK][hapmap]
rs6058549	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6058560	0.85[ASW][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6058570	0.80[ASW][hapmap]
rs6061209	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6061211	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6061222	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6061224	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6061229	0.80[ASW][hapmap];0.85[LWK][hapmap]
rs6579005	0.80[ASW][hapmap]
rs73252373	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73903573	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
TSPY26P	Distal transcriptional regulation
PLAGL2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)