SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 8)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10736715	0.83[ASN][1000 genomes]
rs10897190	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10897191	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10897192	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10897193	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12225574	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17156616	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2668897	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000269089	Proximal transcriptional regulation
NEK8	Distal transcriptional regulation
TLCD1	Distal transcriptional regulation
MIR611	Distal transcriptional regulation
TMEM258	Distal transcriptional regulation
FEN1	Distal transcriptional regulation
FADS2	Distal transcriptional regulation
FADS1	Distal transcriptional regulation
ENSG00000256914	Distal transcriptional regulation
MIR1908	Distal transcriptional regulation
FADS3	Distal transcriptional regulation
RAB3IL1	Distal transcriptional regulation
ENSG00000255553	Distal transcriptional regulation
ENSG00000244176	Distal transcriptional regulation
ADAM17	Distal transcriptional regulation
BRIP1	Distal transcriptional regulation
ARHGDIA	Distal transcriptional regulation
SLC39A10	Distal transcriptional regulation
HIST1H2BK	Distal transcriptional regulation
HIST1H2AH	Distal transcriptional regulation
LINC00854	Distal transcriptional regulation
ESRP2	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)