SNP Report
Basic Infomation
| Name | rs17156616 dbSNP |
|---|---|
| Location | chr:11,61743278 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10736714 | 0.89[CEU][hapmap];0.81[CHB][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10736715 | 0.89[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs10792321 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10897190 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10897191 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10897192 | 1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10897193 | 0.89[CEU][hapmap];0.86[CHB][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10897194 | 0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11230848 | 0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11230849 | 0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11230851 | 0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12225574 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2668897 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4963438 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FADS3 | Distal transcriptional regulation |
| ENSG00000244176 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014