SNP Report

Basic Infomation

Name	rs2668897 dbSNP
Location	chr:11,61731233
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 13)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10736714	0.89[CEU][hapmap];0.95[GIH][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs10736715	0.89[CEU][hapmap];0.85[CHB][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10792321	0.81[EUR][1000 genomes]
rs10897190	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10897191	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10897192	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10897193	0.89[CEU][hapmap];0.95[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10897194	0.89[CEU][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs11230849	0.89[CEU][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs11230851	0.89[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs12225574	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17156616	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4963438	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
BEST1	Proximal transcriptional regulation
ENSG00000269089	Proximal transcriptional regulation
ENSG00000238279	Distal transcriptional regulation
SPATS2	Distal transcriptional regulation
GAPDH	Distal transcriptional regulation
LOH12CR2	Distal transcriptional regulation
LOH12CR1	Distal transcriptional regulation
CARHSP1	Distal transcriptional regulation
ENSG00000261481	Distal transcriptional regulation
PTBP1	Distal transcriptional regulation
C2orf43	Distal transcriptional regulation
SLMAP	Distal transcriptional regulation
LIFR	Distal transcriptional regulation
LIFR-AS1	Distal transcriptional regulation
RPL37	Distal transcriptional regulation
C6orf195	Distal transcriptional regulation
OTUD5	Distal transcriptional regulation
HPS5	Distal transcriptional regulation
GTF2H1	Distal transcriptional regulation
FADS2	Distal transcriptional regulation
FADS1	Distal transcriptional regulation
FADS3	Distal transcriptional regulation
RAB3IL1	Distal transcriptional regulation
ENSG00000255553	Distal transcriptional regulation
ENSG00000244176	Distal transcriptional regulation
ENSG00000266411	Distal transcriptional regulation
VMP1	Distal transcriptional regulation
APRT	Distal transcriptional regulation
POLDIP3	Distal transcriptional regulation
ENSG00000270022	Distal transcriptional regulation
ADAM17	Distal transcriptional regulation
MIR611	Distal transcriptional regulation
TMEM258	Distal transcriptional regulation
FEN1	Distal transcriptional regulation
TAF1D	Distal transcriptional regulation
C11orf54	Distal transcriptional regulation
HIST1H2BD	Distal transcriptional regulation
BEST1	RNA binding protein mediated regulation
FTH1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)