SNP Report
Basic Infomation
| Name | rs12225574 dbSNP |
|---|---|
| Location | chr:11,61737569 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10736714 | 0.84[EUR][1000 genomes] |
| rs10736715 | 0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10792321 | 0.84[EUR][1000 genomes] |
| rs10897190 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10897191 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10897192 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10897193 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs10897194 | 0.84[EUR][1000 genomes] |
| rs11230848 | 0.80[EUR][1000 genomes] |
| rs11230849 | 0.84[EUR][1000 genomes] |
| rs11230851 | 0.84[EUR][1000 genomes] |
| rs17156616 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2668897 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4963438 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FTH1 | Proximal transcriptional regulation |
| FEN1 | Distal transcriptional regulation |
| ENSG00000256914 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| MIR1908 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| RAB3IL1 | Distal transcriptional regulation |
| MIR611 | Distal transcriptional regulation |
| TMEM258 | Distal transcriptional regulation |
| ENSG00000244176 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014