SNP Report

Basic Infomation

Name	rs4813003 dbSNP
Location	chr:20,44763284
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12480534	0.88[ASN][1000 genomes]
rs12481282	0.86[ASN][1000 genomes]
rs12624690	0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs12625346	0.94[ASN][1000 genomes]
rs13041203	0.89[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs1883832	0.85[CHB][hapmap]
rs1883834	0.95[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap];0.91[ASN][1000 genomes]
rs1883835	0.95[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs1883836	0.95[CHB][hapmap];0.88[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs2143698	0.99[ASN][1000 genomes]
rs2143699	0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs34034261	0.92[ASN][1000 genomes]
rs35296663	0.99[ASN][1000 genomes]
rs35377099	0.92[ASN][1000 genomes]
rs3746821	0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3765456	0.99[ASN][1000 genomes]
rs4810485	0.84[CHB][hapmap]
rs4810486	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4813001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4813002	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57147349	0.99[ASN][1000 genomes]
rs59404903	0.93[ASN][1000 genomes]
rs60068127	0.92[ASN][1000 genomes]
rs6032664	0.85[CHB][hapmap]
rs61049680	0.92[ASN][1000 genomes]
rs66815221	0.96[ASN][1000 genomes]
rs73622651	0.83[ASN][1000 genomes]
rs73622652	0.92[ASN][1000 genomes]
rs73622653	0.87[ASN][1000 genomes]

rSNP related genes

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
CCDC121	SCAN
CD40	Pritchard
CD40	SCAN
SLC12A5	SCAN