SNP Report
Basic Infomation
| Name | rs4810486 dbSNP |
|---|---|
| Location | chr:20,44766403 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12480534 | 0.84[ASN][1000 genomes] |
| rs12481282 | 0.81[ASN][1000 genomes] |
| rs12624690 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs12625346 | 0.99[ASN][1000 genomes] |
| rs13041203 | 0.89[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs1883832 | 0.85[CHB][hapmap] |
| rs1883834 | 0.95[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.96[ASN][1000 genomes] |
| rs1883835 | 0.95[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs1883836 | 0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs2143698 | 0.94[ASN][1000 genomes] |
| rs2143699 | 0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.94[ASN][1000 genomes] |
| rs34034261 | 0.96[ASN][1000 genomes] |
| rs35296663 | 0.94[ASN][1000 genomes] |
| rs35377099 | 0.96[ASN][1000 genomes] |
| rs3746821 | 0.95[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.93[ASN][1000 genomes] |
| rs3765456 | 0.94[ASN][1000 genomes] |
| rs4810485 | 0.84[CHB][hapmap] |
| rs4813001 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4813002 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4813003 | 0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs57147349 | 0.94[ASN][1000 genomes] |
| rs59404903 | 0.98[ASN][1000 genomes] |
| rs60068127 | 0.96[ASN][1000 genomes] |
| rs6032664 | 0.85[CHB][hapmap] |
| rs61049680 | 0.96[ASN][1000 genomes] |
| rs66815221 | 0.92[ASN][1000 genomes] |
| rs73622652 | 0.96[ASN][1000 genomes] |
| rs73622653 | 0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014