SNP Report
Basic Infomation
| Name | rs3765456 dbSNP |
|---|---|
| Location | chr:20,44756891 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12480534 | 0.86[ASN][1000 genomes] |
| rs12481282 | 0.84[ASN][1000 genomes] |
| rs12624690 | 0.94[ASN][1000 genomes] |
| rs12625346 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs13041203 | 0.86[ASN][1000 genomes] |
| rs16991114 | 0.86[EUR][1000 genomes] |
| rs1883834 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1883835 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1883836 | 0.91[ASN][1000 genomes] |
| rs2143698 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2143699 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34034261 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs35296663 | 0.97[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35377099 | 0.93[ASN][1000 genomes] |
| rs3746821 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4810486 | 0.94[ASN][1000 genomes] |
| rs4813001 | 0.99[ASN][1000 genomes] |
| rs4813002 | 0.99[ASN][1000 genomes] |
| rs4813003 | 0.99[ASN][1000 genomes] |
| rs57147349 | 0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59404903 | 0.95[ASN][1000 genomes] |
| rs60068127 | 0.93[ASN][1000 genomes] |
| rs61049680 | 0.93[ASN][1000 genomes] |
| rs66815221 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73622651 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs73622652 | 0.93[ASN][1000 genomes] |
| rs73622653 | 0.86[ASN][1000 genomes] |
| rs74174999 | 0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CD40 | Distal transcriptional regulation |
| CD40 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014