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rVarBase
SNP Report
Basic Infomation
Name
rs73622651  
dbSNP
Location
chr:20,44753508
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12625346
0.80[ASN][1000 genomes]
rs2143698
0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2143699
0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35296663
0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3746821
0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3765456
0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4813001
0.83[ASN][1000 genomes]
rs4813002
0.83[ASN][1000 genomes]
rs4813003
0.83[ASN][1000 genomes]
rs57147349
0.84[ASN][1000 genomes]
rs66815221
0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
CD40
Distal transcriptional regulation
CD40
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)