SNP Report

Basic Infomation

Name	rs378943 dbSNP
Location	chr:12,50393372
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 47)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10161020	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10161120	0.94[EUR][1000 genomes]
rs10875992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10875993	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs11169247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11169256	0.96[EUR][1000 genomes]
rs11169259	0.94[EUR][1000 genomes]
rs11169260	0.94[EUR][1000 genomes]
rs11836389	0.96[EUR][1000 genomes]
rs12298110	0.96[EUR][1000 genomes]
rs12311010	0.96[EUR][1000 genomes]
rs12317586	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs17124264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs2291612	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs55802497	0.96[EUR][1000 genomes]
rs55936104	0.94[EUR][1000 genomes]
rs56099252	0.94[EUR][1000 genomes]
rs56159935	0.96[EUR][1000 genomes]
rs56232366	0.90[EUR][1000 genomes]
rs56259551	0.96[EUR][1000 genomes]
rs57014171	0.96[EUR][1000 genomes]
rs60042968	0.96[EUR][1000 genomes]
rs60456498	0.96[EUR][1000 genomes]
rs60905953	0.96[EUR][1000 genomes]
rs611434	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs615382	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs629754	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs661823	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs694851	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs706785	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7131715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs7303531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs7306035	0.92[EUR][1000 genomes]
rs7308994	0.96[EUR][1000 genomes]
rs7309480	0.96[EUR][1000 genomes]
rs7309940	0.96[EUR][1000 genomes]
rs7309966	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs73119651	0.96[EUR][1000 genomes]
rs73119671	0.96[EUR][1000 genomes]
rs73119681	0.94[EUR][1000 genomes]
rs73119688	0.94[EUR][1000 genomes]
rs73119690	0.94[EUR][1000 genomes]
rs7961683	0.96[EUR][1000 genomes]
rs7972522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7979958	0.96[EUR][1000 genomes]
rs9325146	0.96[EUR][1000 genomes]
rs9630300	0.86[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
RACGAP1	Distal transcriptional regulation
ASIC1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)