SNP Report

Basic Infomation

Name	rs55802497 dbSNP
Location	chr:12,50379946
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10161020	0.98[EUR][1000 genomes]
rs10161120	0.98[EUR][1000 genomes]
rs10875992	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10875993	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11169247	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11169256	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11169259	0.98[EUR][1000 genomes]
rs11169260	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11836389	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12298110	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12311010	0.96[EUR][1000 genomes]
rs12317586	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17124264	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291612	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs378943	0.96[EUR][1000 genomes]
rs55936104	0.98[EUR][1000 genomes]
rs56099252	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56159935	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56232366	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56259551	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57014171	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60042968	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60456498	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60905953	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs611434	0.94[EUR][1000 genomes]
rs615382	0.96[EUR][1000 genomes]
rs629754	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs661823	0.83[EUR][1000 genomes]
rs694851	0.92[EUR][1000 genomes]
rs7131715	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7303531	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7306035	0.96[EUR][1000 genomes]
rs7308994	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7309480	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7309940	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7309966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73119648	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73119651	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73119671	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73119681	0.98[EUR][1000 genomes]
rs73119688	0.98[EUR][1000 genomes]
rs73119690	0.98[EUR][1000 genomes]
rs7961683	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7972522	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7979958	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9325146	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
RACGAP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)