SNP Report
Basic Infomation
| Name | rs7303531 dbSNP |
|---|---|
| Location | chr:12,50420003 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 48)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10161020 | 1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10161120 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10875990 | 0.90[GIH][hapmap] |
| rs10875992 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes] |
| rs10875993 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169247 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes] |
| rs11169256 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169259 | 0.98[EUR][1000 genomes] |
| rs11169260 | 0.98[EUR][1000 genomes] |
| rs11836389 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12298110 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12311010 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12317586 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17124264 | 0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2291612 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2307082 | 0.86[JPT][hapmap] |
| rs378943 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs55802497 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs55936104 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs56099252 | 0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs56159935 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs56232366 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs56259551 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs57014171 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs60042968 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs60456498 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs60905953 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs611434 | 0.94[EUR][1000 genomes] |
| rs615382 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs629754 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs661823 | 0.83[EUR][1000 genomes] |
| rs694851 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[EUR][1000 genomes] |
| rs7131715 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7306035 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7308994 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7309480 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7309940 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7309966 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73119648 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs73119651 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73119671 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73119681 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73119688 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs73119690 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7961683 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7972522 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes] |
| rs7979958 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9325146 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RACGAP1 | Proximal transcriptional regulation |
| BCDIN3D | Distal transcriptional regulation |
| AQP6 | Distal transcriptional regulation |
| CERS5 | Distal transcriptional regulation |
| RACGAP1 | Distal transcriptional regulation |
| ASIC1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014