SNP Report
Basic Infomation
| Name | rs3019626 dbSNP |
|---|---|
| Location | chr:11,61808272 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10792324 | 0.84[CEU][hapmap] |
| rs11230879 | 0.83[EUR][1000 genomes] |
| rs12798399 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2089925 | 0.84[CEU][hapmap];0.82[TSI][hapmap] |
| rs259880 | 0.82[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs3019618 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3019621 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs3019623 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs427354 | 0.92[ASN][1000 genomes] |
| rs6591687 | 0.89[CEU][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs7120404 | 0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7122033 | 0.81[EUR][1000 genomes] |
| rs7950734 | 0.84[CEU][hapmap] |
| rs7951553 | 0.85[EUR][1000 genomes] |
| rs7951604 | 0.89[CEU][hapmap];0.80[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
| BEST1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014