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rVarBase
SNP Report
Basic Infomation
Name
rs3019621  
dbSNP
Location
chr:11,61807783
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12798399
0.80[AMR][1000 genomes]
rs3019618
0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3019623
0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3019626
0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs427354
0.88[ASN][1000 genomes]
rs7120404
0.87[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
FTH1
Distal transcriptional regulation
ENSG00000269089
Distal transcriptional regulation
BEST1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)