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rVarBase
SNP Report
Basic Infomation
Name
rs3019623  
dbSNP
Location
chr:11,61807985
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11230879
0.81[EUR][1000 genomes]
rs12798399
0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs259880
0.80[ASN][1000 genomes]
rs3019618
0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3019621
0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3019626
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs427354
0.92[ASN][1000 genomes]
rs7120404
0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7951553
0.84[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
FTH1
Distal transcriptional regulation
ENSG00000269089
Distal transcriptional regulation
BEST1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)