SNP Report
Basic Infomation
| Name | rs7951604 dbSNP |
|---|---|
| Location | chr:11,61784827 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10792324 | 0.81[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs11605994 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12789285 | 0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12798399 | 0.91[EUR][1000 genomes] |
| rs2089925 | 0.80[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs2868723 | 0.80[EUR][1000 genomes] |
| rs3019626 | 0.89[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs4963446 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6591687 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7103149 | 0.82[EUR][1000 genomes] |
| rs7122033 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7950734 | 0.81[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7950854 | 0.81[EUR][1000 genomes] |
| rs7951553 | 0.91[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000244176 | Proximal transcriptional regulation |
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014