SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 14)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10792324	0.82[EUR][1000 genomes]
rs11605994	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs12789285	0.85[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12798399	0.91[EUR][1000 genomes]
rs2089925	0.80[CEU][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs2868723	0.80[EUR][1000 genomes]
rs3019626	0.89[CEU][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs4963446	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.82[ASN][1000 genomes]
rs7103149	0.82[EUR][1000 genomes]
rs7122033	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950734	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs7950854	0.81[EUR][1000 genomes]
rs7951553	0.91[EUR][1000 genomes]
rs7951604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000244176	Proximal transcriptional regulation
FTH1	Distal transcriptional regulation
ENSG00000269089	Distal transcriptional regulation
ENSG00000244176	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
INCENP	SCAN
STX5	SCAN