SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 13)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10083205	0.95[LWK][hapmap];0.91[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs10784705	0.87[LWK][hapmap];0.94[MKK][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap]
rs10878731	1.00[CEU][hapmap];0.90[JPT][hapmap];0.95[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11177226	0.87[LWK][hapmap];0.94[MKK][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap]
rs1492318	0.90[JPT][hapmap]
rs1492319	0.87[ASW][hapmap];1.00[CEU][hapmap];0.90[JPT][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1602635	0.91[YRI][hapmap]
rs2588399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920820	0.90[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs2920821	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7304371	0.82[YRI][hapmap]
rs7972739	0.91[YRI][hapmap]
rs7974188	0.91[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
MUC19	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)