SNP Report
Basic Infomation
| Name | rs7304371 dbSNP |
|---|---|
| Location | chr:12,40958298 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10083205 | 0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10784705 | 0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[ASN][1000 genomes] |
| rs11177164 | 0.82[ASN][1000 genomes] |
| rs11177178 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11177226 | 0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[ASN][1000 genomes] |
| rs1492319 | 0.82[YRI][hapmap] |
| rs1602635 | 0.87[JPT][hapmap] |
| rs2588399 | 0.81[YRI][hapmap] |
| rs2933352 | 0.82[YRI][hapmap] |
| rs3751173 | 0.98[ASN][1000 genomes] |
| rs56080664 | 0.98[ASN][1000 genomes] |
| rs7955772 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7972739 | 0.87[JPT][hapmap] |
| rs7974188 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MUC19 | Proximal transcriptional regulation |
| MUC19 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| GNE | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014