SNP Report
Basic Infomation
| Name | rs1492319 dbSNP |
|---|---|
| Location | chr:12,40918345 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10083205 | 0.86[ASW][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap] |
| rs10784705 | 0.86[ASW][hapmap];0.83[MKK][hapmap];0.91[YRI][hapmap] |
| rs10878731 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11177226 | 0.86[ASW][hapmap];0.83[MKK][hapmap];0.91[YRI][hapmap] |
| rs1492318 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs1602635 | 0.91[YRI][hapmap] |
| rs2588399 | 1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2920820 | 0.81[JPT][hapmap] |
| rs2920821 | 0.90[JPT][hapmap];0.95[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2933352 | 0.87[ASW][hapmap];1.00[CEU][hapmap];0.90[JPT][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7304371 | 0.82[YRI][hapmap] |
| rs7972739 | 0.91[YRI][hapmap] |
| rs7974188 | 0.91[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MUC19 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CYP2U1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014