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rVarBase
SNP Report
Basic Infomation
Name
rs2588399  
dbSNP
Location
chr:12,40912236
Allele
G/T
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10083205
1.00[YRI][hapmap]
rs10784705
0.91[YRI][hapmap]
rs10878731
1.00[CEU][hapmap];0.90[JPT][hapmap];0.95[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11177226
0.91[YRI][hapmap]
rs1492318
0.90[JPT][hapmap]
rs1492319
1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1602635
0.92[YRI][hapmap]
rs2920820
0.90[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs2920821
1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2933352
1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7304371
0.81[YRI][hapmap]
rs7972739
0.91[YRI][hapmap]
rs7974188
0.92[YRI][hapmap]
rSNP related genes
Symbol
Regulation type
MUC19
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)