SNP Report
Basic Infomation
| Name | rs28833913 dbSNP |
|---|---|
| Location | chr:14,68347112 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 138)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10130605 | 1.00[EUR][1000 genomes] |
| rs10130837 | 1.00[EUR][1000 genomes] |
| rs10130997 | 0.80[AFR][1000 genomes] |
| rs10131022 | 0.80[AFR][1000 genomes] |
| rs10132711 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10133485 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10133652 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10134763 | 0.80[AFR][1000 genomes] |
| rs10134988 | 0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10135925 | 1.00[EUR][1000 genomes] |
| rs10137457 | 0.80[AFR][1000 genomes] |
| rs10137712 | 1.00[EUR][1000 genomes] |
| rs10138719 | 0.80[AFR][1000 genomes] |
| rs10142285 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10142687 | 0.92[EUR][1000 genomes] |
| rs10142929 | 0.92[EUR][1000 genomes] |
| rs10143895 | 0.80[AFR][1000 genomes] |
| rs10144128 | 0.85[EUR][1000 genomes] |
| rs10145884 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10146719 | 0.80[AFR][1000 genomes] |
| rs10146766 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10146831 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10147052 | 0.80[AFR][1000 genomes] |
| rs10148893 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10150330 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10151123 | 0.80[AFR][1000 genomes] |
| rs10450891 | 1.00[EUR][1000 genomes] |
| rs10467819 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1073024 | 0.86[EUR][1000 genomes] |
| rs1073025 | 1.00[EUR][1000 genomes] |
| rs1073026 | 1.00[EUR][1000 genomes] |
| rs11158710 | 0.80[AFR][1000 genomes] |
| rs1118397 | 1.00[EUR][1000 genomes] |
| rs17104681 | 0.85[ASN][1000 genomes] |
| rs17104689 | 0.85[ASN][1000 genomes] |
| rs17104700 | 0.85[ASN][1000 genomes] |
| rs17104758 | 0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17104774 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17104783 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17104786 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17104793 | 1.00[EUR][1000 genomes] |
| rs17104796 | 1.00[EUR][1000 genomes] |
| rs17104799 | 1.00[EUR][1000 genomes] |
| rs17104824 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17104829 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17104862 | 0.80[AFR][1000 genomes] |
| rs17104863 | 0.80[AFR][1000 genomes] |
| rs17783202 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2180537 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28396172 | 0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs28405326 | 1.00[EUR][1000 genomes] |
| rs28408783 | 1.00[EUR][1000 genomes] |
| rs28434770 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28444090 | 1.00[EUR][1000 genomes] |
| rs28473357 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs28516665 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28697984 | 0.84[ASN][1000 genomes] |
| rs28701947 | 1.00[EUR][1000 genomes] |
| rs28751961 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs28757308 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28816808 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28835585 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs28847917 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs28869007 | 0.80[AFR][1000 genomes] |
| rs28896907 | 1.00[EUR][1000 genomes] |
| rs34057001 | 0.80[AFR][1000 genomes] |
| rs34663731 | 0.85[ASN][1000 genomes] |
| rs34700596 | 1.00[EUR][1000 genomes] |
| rs34768780 | 0.85[ASN][1000 genomes] |
| rs34787467 | 0.85[ASN][1000 genomes] |
| rs35010674 | 0.80[AFR][1000 genomes] |
| rs35588855 | 0.85[ASN][1000 genomes] |
| rs35608268 | 0.84[EUR][1000 genomes] |
| rs35927243 | 0.85[ASN][1000 genomes] |
| rs4899226 | 0.92[EUR][1000 genomes] |
| rs4899228 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4899229 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4902523 | 0.92[EUR][1000 genomes] |
| rs4902525 | 0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4902529 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4902530 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4902531 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4902532 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4902534 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4902537 | 1.00[EUR][1000 genomes] |
| rs4902541 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4902543 | 0.85[EUR][1000 genomes] |
| rs60014063 | 1.00[EUR][1000 genomes] |
| rs6573802 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6573806 | 0.80[AFR][1000 genomes] |
| rs7140987 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7141203 | 0.85[ASN][1000 genomes] |
| rs7143377 | 0.85[ASN][1000 genomes] |
| rs7143521 | 0.85[ASN][1000 genomes] |
| rs7145385 | 0.80[AFR][1000 genomes] |
| rs7147296 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7149122 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7149351 | 0.85[ASN][1000 genomes] |
| rs7149356 | 0.85[ASN][1000 genomes] |
| rs7149360 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7149460 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7149796 | 0.92[EUR][1000 genomes] |
| rs7150467 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7150860 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7151035 | 0.92[EUR][1000 genomes] |
| rs7152445 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7152727 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7153470 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7157550 | 0.80[AFR][1000 genomes] |
| rs7157720 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7159786 | 0.85[ASN][1000 genomes] |
| rs8003181 | 1.00[EUR][1000 genomes] |
| rs8006175 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8007989 | 0.92[EUR][1000 genomes] |
| rs8008791 | 1.00[EUR][1000 genomes] |
| rs8010136 | 0.80[AFR][1000 genomes] |
| rs8014844 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8015427 | 0.80[AFR][1000 genomes] |
| rs8015520 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs8015595 | 0.92[EUR][1000 genomes] |
| rs8015609 | 0.80[AFR][1000 genomes] |
| rs8015741 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8016246 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs8016563 | 1.00[EUR][1000 genomes] |
| rs8017718 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs8017930 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs8018161 | 0.80[AFR][1000 genomes] |
| rs8018528 | 0.80[AFR][1000 genomes] |
| rs8018883 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs8019420 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs8020512 | 1.00[EUR][1000 genomes] |
| rs8023116 | 0.80[AFR][1000 genomes] |
| rs957930 | 0.80[AFR][1000 genomes] |
| rs9652362 | 1.00[EUR][1000 genomes] |
| rs9652363 | 0.84[EUR][1000 genomes] |
| rs9652364 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9672111 | 0.80[AFR][1000 genomes] |
| rs9796374 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014