SNP Report
Basic Infomation
| Name | rs2425764 dbSNP |
|---|---|
| Location | chr:20,44800445 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11697286 | 0.89[ASN][1000 genomes] |
| rs11697791 | 1.00[JPT][hapmap] |
| rs11698309 | 1.00[CHB][hapmap] |
| rs11699388 | 0.89[ASN][1000 genomes] |
| rs1320999 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2425754 | 0.80[CEU][hapmap];0.91[TSI][hapmap] |
| rs2425759 | 0.85[ASN][1000 genomes] |
| rs2425760 | 0.80[CEU][hapmap] |
| rs2425761 | 0.80[CEU][hapmap];0.91[TSI][hapmap] |
| rs4142256 | 0.88[CEU][hapmap] |
| rs4813009 | 0.89[ASN][1000 genomes] |
| rs4813010 | 0.89[ASN][1000 genomes] |
| rs4813011 | 0.89[ASN][1000 genomes] |
| rs57475044 | 0.89[ASN][1000 genomes] |
| rs6032689 | 1.00[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs754317 | 1.00[CHB][hapmap];0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000229957 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| BOP1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014