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rVarBase
SNP Report
Basic Infomation
Name
rs1320999  
dbSNP
Location
chr:20,44797583
Allele
G/C
LD-proxy of rSNPs(r
2
>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11697286
0.89[ASN][1000 genomes]
rs11697791
1.00[JPT][hapmap]
rs11698309
1.00[CHB][hapmap]
rs11699388
0.89[ASN][1000 genomes]
rs2425759
0.85[ASN][1000 genomes]
rs2425761
0.82[YRI][hapmap]
rs2425764
0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142256
0.83[CEU][hapmap]
rs4813009
0.89[ASN][1000 genomes]
rs4813010
0.89[ASN][1000 genomes]
rs4813011
0.89[ASN][1000 genomes]
rs57475044
0.89[ASN][1000 genomes]
rs6032689
1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs754317
1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000229957
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)