SNP Report
Basic Infomation
| Name | rs754317 dbSNP |
|---|---|
| Location | chr:20,44791972 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11569323 | 1.00[JPT][hapmap] |
| rs11697286 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11697791 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs11698309 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs11699388 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1320999 | 1.00[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs2425764 | 1.00[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs4813009 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4813010 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4813011 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57041084 | 0.92[AFR][1000 genomes] |
| rs57475044 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032689 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs754315 | 0.92[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014