SNP Report
Basic Infomation
| Name | rs2425761 dbSNP |
|---|---|
| Location | chr:20,44797562 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13045771 | 1.00[JPT][hapmap] |
| rs1320999 | 0.82[YRI][hapmap] |
| rs2425754 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs2425755 | 0.87[EUR][1000 genomes] |
| rs2425760 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2425764 | 0.80[CEU][hapmap];0.91[TSI][hapmap] |
| rs2425765 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2425769 | 1.00[JPT][hapmap] |
| rs2425770 | 1.00[JPT][hapmap] |
| rs3092795 | 0.97[EUR][1000 genomes] |
| rs4142256 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs6017746 | 1.00[JPT][hapmap] |
| rs6074041 | 1.00[JPT][hapmap] |
| rs6074043 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000229957 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| YWHAB | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014